| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | C Mike Piazza LA |
| 2 | 23rd | 3B Chipper Jones Atl |
| 3 | 26th | DH Edgar Martinez Sea |
| 4 | 47th | SS Derek Jeter NYA |
| 5 | 50th | OF Moises Alou Hou |
| 6 | 71st | OF Rusty Greer Tex |
| 7 | 74th | OF Jim Edmonds Ana |
| 8 | 95th | P John Wetteland Tex |
| 9 | 98th | P Hideo Nomo LA |
| 10 | 119th | P Ramon Martinez LA |
| 11 | 122nd | P Billy Wagner Hou |
| 12 | 143rd | P Livan Hernandez Fla |
| 13 | 146th | OF Bernard Gilkey NYN |
| 14 | 167th | P Todd Stottlemyre StL |
| 15 | 170th | 1B David Segui Sea |
| 16 | 191st | 3B Fernando Tatis Tex |
| 17 | 194th | P Pedro Astacio Col |
| 18 | 215th | P Brett Tomko Cin |
| 19 | 218th | DH Joe Carter Bal |
| 20 | 239th | P Brian Rose Bos |
| 21 | 242nd | 2B Jose Offerman KC |
| 22 | 263rd | 1B Kevin Young Pit |
| 23 | 266th | DH Mike Stanley Tor |
| 24 | 287th | DH Reggie Jefferson Bos |
| 25 | 290th | 2B Tony Fernandez Tor |
| 26 | 311th | C Scott Hatteberg Bos |