| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Prince Fielder Mil |
| 2 | 15th | OF Grady Sizemore Cle |
| 3 | 34th | C Russell Martin LAD |
| 4 | 39th | SS Derek Jeter NYA |
| 5 | 58th | SP Dan Haren Ari |
| 6 | 63rd | SP Felix Hernandez Sea |
| 7 | 82nd | OF Ken Griffey Jr ChA |
| 8 | 87th | OF Eric Byrnes Ari |
| 9 | 106th | SP Tim Hudson Atl |
| 10 | 111th | 3B Troy Glaus StL |
| 11 | 130th | SP Jon Garland Ari |
| 12 | 135th | SP Mark Buehrle ChA |
| 13 | 154th | RP Manuel Corpas Col |
| 14 | 159th | 2B Placido Polanco Det |
| 15 | 178th | 1B Carlos Delgado NYN |
| 16 | 183rd | SP Tom Gorzelanny Pit |
| 17 | 202nd | 2B Dustin Pedroia Bos |
| 18 | 207th | OF Shane Victorino Phi |
| 19 | 226th | C Mike Napoli LAA |
| 20 | 231st | SP Kevin Gregg Fla |
| 21 | 250th | OF Lastings Milledge Was |
| 22 | 255th | 3B Casey Blake LAD |
| 23 | 274th | SP Shaun Marcum Tor |
| 24 | 279th | OF Garret Anderson LAA |
| 25 | 298th | SP Jose Contreras ChA |
| 26 | 303rd | 1B Casey Kotchman Atl |
| 27 | 322nd | SS Alex Gonzalez Cin |
| 28 | 327th | 3B Scott Rolen Tor |
| 29 | 346th | OF Barry Bonds SF |