| Round | Overall | Player |
|---|---|---|
| 1 | 11th | DH David Ortiz Bos |
| 2 | 14th | OF Ryan Braun Mil |
| 3 | 35th | 3B Aramis Ramirez ChN |
| 4 | 38th | OF Alexis Rios Tor |
| 5 | 59th | 1B Paul Konerko ChA |
| 6 | 62nd | 2B Ian Kinsler Tex |
| 7 | 83rd | SP Aaron Harang Cin |
| 8 | 86th | SS Rafael Furcal LAD |
| 9 | 107th | OF Jermaine Dye ChA |
| 10 | 110th | SP Javier Vazquez ChA |
| 11 | 131st | RP Billy Wagner NYN |
| 12 | 134th | SP Chad Billingsley LAD |
| 13 | 155th | RP Trevor Hoffman Mil |
| 14 | 158th | 2B Kelly Johnson Atl |
| 15 | 179th | SP Bronson Arroyo Cin |
| 16 | 182nd | SS Orlando Cabrera ChA |
| 17 | 203rd | OF Aaron Rowand SF |
| 18 | 206th | SP Randy Johnson Ari |
| 19 | 227th | C Ramon Hernandez Bal |
| 20 | 230th | RP Brad Lidge Phi |
| 21 | 251st | SP Zack Greinke KC |
| 22 | 254th | SP Tom Glavine Atl |
| 23 | 275th | C J.R. Towles Hou |
| 24 | 278th | DH Frank Thomas Oak |
| 25 | 299th | 3B Ty Wigginton Bal |
| 26 | 302nd | 1B Aubrey Huff Bal |
| 27 | 323rd | OF Milton Bradley ChN |
| 28 | 326th | SP Chuck James Atl |
| 29 | 347th | SP Jarrod Washburn Sea |