| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Miguel Cabrera Det |
| 2 | 22nd | 1B Carlos Pena TB |
| 3 | 27th | OF Manny Ramirez LAD |
| 4 | 46th | 2B Robinson Cano NYA |
| 5 | 51st | OF Curtis Granderson Det |
| 6 | 70th | SP Roberto Hernandez Cle |
| 7 | 75th | C Brian McCann Atl |
| 8 | 94th | OF Jeff Francoeur Atl |
| 9 | 99th | SS J.J. Hardy Mil |
| 10 | 118th | SP Joe Blanton Phi |
| 11 | 123rd | SP Ben Sheets Mil |
| 12 | 142nd | RP Takashi Saito Bos |
| 13 | 147th | OF Rick Ankiel StL |
| 14 | 166th | 1B Jason Giambi Oak |
| 15 | 171st | RP Eric Gagne Mil |
| 16 | 190th | OF Johnny Damon NYA |
| 17 | 195th | SP Barry Zito SF |
| 18 | 214th | SP Gil Meche KC |
| 19 | 219th | 3B Bill Hall Mil |
| 20 | 238th | SP Ervin Santana LAA |
| 21 | 243rd | 1B Richie Sexson Sea |
| 22 | 262nd | 2B Felipe Lopez Was |
| 23 | 267th | SP Mike Hampton Atl |
| 24 | 286th | RP Jay Bergmann Was |
| 25 | 291st | SP Kevin Millwood Tex |
| 26 | 310th | 2B Tadahito Iguchi SD |
| 27 | 315th | C Ronny Paulino Pit |
| 28 | 334th | SS Yuniesky Betancourt Sea |
| 29 | 339th | OF Xavier Nady NYA |