| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Larry Walker Col |
| 2 | 18th | 1B Mo Vaughn Bos |
| 3 | 31st | P Andy Pettitte NYA |
| 4 | 42nd | P Kevin Brown SD |
| 5 | 55th | P Tom Glavine Atl |
| 6 | 66th | OF Steve Finley SD |
| 7 | 79th | P David Cone NYA |
| 8 | 90th | 3B Bobby Bonilla Fla |
| 9 | 103rd | P Jaret Wright Cle |
| 10 | 114th | SS Royce Clayton StL |
| 11 | 127th | P Matt Morris StL |
| 12 | 138th | OF Brian L. Hunter Det |
| 13 | 151st | 2B Joey Cora Sea |
| 14 | 162nd | OF Butch Huskey NYN |
| 15 | 175th | DH Paul Molitor Min |
| 16 | 186th | C Brian Johnson SF |
| 17 | 199th | 3B Cal Ripken Bal |
| 18 | 210th | 3B Tim Naehring Bos |
| 19 | 223rd | P Rick Reed NYN |
| 20 | 234th | OF Darryl Hamilton SF |
| 21 | 247th | C Joe Girardi NYA |
| 22 | 258th | 1B Will Clark Tex |
| 23 | 271st | P Mike Remlinger Cin |
| 24 | 282nd | OF Mark Kotsay Fla |
| 25 | 295th | 3B Ron Coomer Min |
| 26 | 306th | P Kenny Rogers Oak |