| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 3B David Wright NYN |
| 2 | 23rd | OF Manny Ramirez LAD |
| 3 | 26th | 2B Dustin Pedroia Bos |
| 4 | 47th | SP Jake Peavy ChA |
| 5 | 50th | SP Dan Haren Ari |
| 6 | 71st | C Joe Mauer Min |
| 7 | 74th | SP Francisco Liriano Min |
| 8 | 95th | OF Ryan Ludwick StL |
| 9 | 98th | 1B Aubrey Huff SF |
| 10 | 119th | OF Raul Ibanez Phi |
| 11 | 122nd | SP Matt Garza TB |
| 12 | 143rd | OF Justin Upton Ari |
| 13 | 146th | 3B Jorge Cantu Fla |
| 14 | 167th | SP Hiroki Kuroda LAD |
| 15 | 170th | SP Chris Young SD |
| 16 | 191st | OF Ichiro Suzuki Sea |
| 17 | 194th | SS Mike Aviles KC |
| 18 | 215th | SP Justin Duchscherer Oak |
| 19 | 218th | SP Pedro Martinez Phi |
| 20 | 239th | 1B Jeff Clement Pit |
| 21 | 242nd | 1B Mike Jacobs KC |
| 22 | 263rd | RP Troy Percival TB |
| 23 | 266th | RP Joey Devine Oak |
| 24 | 287th | OF Nick Swisher NYA |
| 25 | 290th | SP Randy Wolf LAD |
| 26 | 311th | SP Jeff Samardzija ChN |
| 27 | 314th | SS Elvis Andrus Tex |
| 28 | 335th | 2B Mike Fontenot ChN |
| 29 | 338th | 3B Scott Rolen Cin |