| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 1B Jeff Bagwell Hou |
| 2 | 21st | OF Bernie Williams NYA |
| 3 | 28th | P Pedro Martinez Bos |
| 4 | 45th | P Mariano Rivera NYA |
| 5 | 52nd | OF Paul O'Neill NYA |
| 6 | 69th | 3B Scott Rolen Phi |
| 7 | 76th | 2B Jeff Kent SF |
| 8 | 93rd | P Shawn Estes SF |
| 9 | 100th | P Darryl Kile Col |
| 10 | 117th | P Andy Benes Ari |
| 11 | 124th | SS Jose Valentin Mil |
| 12 | 141st | DH Chili Davis NYA |
| 13 | 148th | 1B J.T. Snow SF |
| 14 | 165th | OF Brian Jordan StL |
| 15 | 172nd | 3B Willie Greene Cin |
| 16 | 189th | C Jorge Fabregas Ari |
| 17 | 196th | P John Burkett Tex |
| 18 | 213th | OF Magglio Ordonez ChA |
| 19 | 220th | 3B Todd Walker Min |
| 20 | 237th | P Victor Santos Det |
| 21 | 244th | P Tony Saunders TB |
| 22 | 261st | OF Troy O'Leary Bos |
| 23 | 268th | P Jaime Navarro ChA |
| 24 | 285th | P Scott Sanders Det |
| 25 | 292nd | 3B Sean Berry Hou |
| 26 | 309th | OF Shawn Green Tor |