| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 2B Ian Kinsler Tex |
| 2 | 16th | SS Jimmy Rollins Phi |
| 3 | 33rd | SP Roy Halladay Tor |
| 4 | 40th | 1B Carlos Pena TB |
| 5 | 57th | OF Nate McLouth Atl |
| 6 | 64th | SP James Shields TB |
| 7 | 81st | RP Joe Nathan Min |
| 8 | 88th | 1B Carlos Delgado NYN |
| 9 | 105th | OF Andre Ethier LAD |
| 10 | 112th | SP Javier Vazquez NYA |
| 11 | 129th | SP Erik Bedard Sea |
| 12 | 136th | SP Ervin Santana LAA |
| 13 | 153rd | OF Nelson Cruz Tex |
| 14 | 160th | 3B Mike Lowell Bos |
| 15 | 177th | 3B Pablo Sandoval SF |
| 16 | 184th | RP Heath Bell SD |
| 17 | 201st | OF Johnny Damon NYA |
| 18 | 208th | SP Jeremy Guthrie Bal |
| 19 | 225th | 1B Carlos Guillen Det |
| 20 | 232nd | OF Torii Hunter LAA |
| 21 | 249th | RP George Sherrill LAD |
| 22 | 256th | SP Clay Buchholz Bos |
| 23 | 273rd | SS Edgar Renteria SF |
| 24 | 280th | DH Gary Sheffield NYN |
| 25 | 297th | 3B Eric Chavez Oak |
| 26 | 304th | RP Chris Ray Tex |
| 27 | 321st | 2B Freddy Sanchez SF |
| 28 | 328th | SP John Lannan Was |
| 29 | 345th | OF Brian S. Giles SD |