| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Barry Bonds SF |
| 2 | 24th | 3B Ken Caminiti SD |
| 3 | 25th | OF Tim Salmon Ana |
| 4 | 48th | 1B Rafael Palmeiro Bal |
| 5 | 49th | P Curt Schilling Phi |
| 6 | 72nd | P Troy Percival Ana |
| 7 | 73rd | 2B Delino DeShields StL |
| 8 | 96th | OF Ben Grieve Oak |
| 9 | 97th | P Justin Thompson Det |
| 10 | 120th | C Jason Kendall Pit |
| 11 | 121st | P Todd Jones Det |
| 12 | 144th | P John Rocker Atl |
| 13 | 145th | SS Edgar Renteria Fla |
| 14 | 168th | OF Garret Anderson Ana |
| 15 | 169th | P Jeff Brantley StL |
| 16 | 192nd | OF Marty Cordova Min |
| 17 | 193rd | 3B Russ Davis Sea |
| 18 | 216th | P Kirk Rueter SF |
| 19 | 217th | P Willie Blair Ari |
| 20 | 240th | P Rich Loiselle Pit |
| 21 | 241st | C Brad Ausmus Hou |
| 22 | 264th | OF Chris Stynes Cin |
| 23 | 265th | P Steve Trachsel ChN |
| 24 | 288th | SS Walt Weiss Atl |
| 25 | 289th | OF Richard Hidalgo Hou |
| 26 | 312th | OF Quinton McCracken TB |