| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Miguel Cabrera Det |
| 2 | 15th | OF Manny Ramirez LAD |
| 3 | 34th | OF Carlos Quentin ChA |
| 4 | 39th | SP Josh Beckett Bos |
| 5 | 58th | DH Vladimir Guerrero Tex |
| 6 | 63rd | 3B Jhonny Peralta Cle |
| 7 | 82nd | 2B Robinson Cano NYA |
| 8 | 87th | SP Francisco Liriano Min |
| 9 | 106th | SP Rich Harden Tex |
| 10 | 111th | RP Jose Valverde Det |
| 11 | 130th | 3B Mark Reynolds Ari |
| 12 | 135th | OF Rick Ankiel KC |
| 13 | 154th | C Mike Napoli LAA |
| 14 | 159th | 1B Paul Konerko ChA |
| 15 | 178th | SP Joe Saunders LAA |
| 16 | 183rd | SP Hiroki Kuroda LAD |
| 17 | 202nd | 2B Jose Lopez Sea |
| 18 | 207th | OF Lastings Milledge Pit |
| 19 | 226th | C Ramon Hernandez Cin |
| 20 | 231st | SS Orlando Cabrera Oak |
| 21 | 250th | DH Hank Blalock Tex |
| 22 | 255th | SP Wandy Rodriguez Hou |
| 23 | 274th | 3B Eric Chavez Oak |
| 24 | 279th | 1B Casey Kotchman Bos |
| 25 | 298th | SP Tim Wakefield Bos |
| 26 | 303rd | RP Chris Perez StL |
| 27 | 322nd | C Jason Varitek Bos |
| 28 | 327th | SP Kelvim Escobar LAA |
| 29 | 346th | OF Eric Byrnes Ari |