| Round | Overall | Player |
|---|---|---|
| 1 | 11th | DH Juan Gonzalez Tex |
| 2 | 14th | 1B Jim Thome Cle |
| 3 | 35th | C Sandy Alomar Jr. Cle |
| 4 | 38th | P Randy Myers Tor |
| 5 | 59th | P Jose Mesa Cle |
| 6 | 62nd | P Denny Neagle Atl |
| 7 | 83rd | OF Geronimo Berroa Cle |
| 8 | 86th | P Rod Beck ChN |
| 9 | 107th | OF Andruw Jones Atl |
| 10 | 110th | SS Kevin Elster Tex |
| 11 | 131st | P Scott Erickson Bal |
| 12 | 134th | OF Henry Rodriguez ChN |
| 13 | 155th | 3B Dave Hollins Ana |
| 14 | 158th | 2B Tony Womack Pit |
| 15 | 179th | C Jeff Reed Col |
| 16 | 182nd | P Mark Clark ChN |
| 17 | 203rd | P Francisco Cordova Pit |
| 18 | 206th | SS Jeff Blauser ChN |
| 19 | 227th | P Heathcliff Slocumb Sea |
| 20 | 230th | 2B Carlos Baerga NYN |
| 21 | 251st | OF B.J. Surhoff Bal |
| 22 | 254th | P Scott Kamieniecki Bal |
| 23 | 275th | P Doug Jones Mil |
| 24 | 278th | 3B Charlie Hayes SF |
| 25 | 299th | OF Brian S. Giles Cle |
| 26 | 302nd | OF Greg Vaughn SD |