| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Albert Pujols StL |
| 2 | 24th | 3B Ryan Zimmerman Was |
| 3 | 25th | SS Jimmy Rollins Phi |
| 4 | 48th | 2B Dan Uggla Atl |
| 5 | 49th | OF Jayson Werth Was |
| 6 | 72nd | OF Andre Ethier LAD |
| 7 | 73rd | RP Heath Bell SD |
| 8 | 96th | SP Jered Weaver LAA |
| 9 | 97th | C Ben Molina Tex |
| 10 | 120th | OF Michael Cuddyer Min |
| 11 | 121st | SP Joel Pineiro LAA |
| 12 | 144th | SP Mark Buehrle ChA |
| 13 | 145th | DH Jason Kubel Min |
| 14 | 168th | RP Rafael Soriano TB |
| 15 | 169th | C Kurt Suzuki Oak |
| 16 | 192nd | OF Cody Ross Fla |
| 17 | 193rd | 1B Russ Branyan Sea |
| 18 | 216th | 3B Albert Callaspo LAA |
| 19 | 217th | SS Marcos Scutaro Bos |
| 20 | 240th | SP Jeff Niemann TB |
| 21 | 241st | SP Shaun Marcum Mil |
| 22 | 264th | SP Kevin Millwood Bal |
| 23 | 265th | 3B Casey Blake LAD |
| 24 | 288th | SP Luke Hochevar KC |
| 25 | 289th | 3B Pedro Feliz STL |
| 26 | 312th | C Rod Barajas NYN |
| 27 | 313th | OF David DeJesus KC |
| 28 | 336th | SP Jake Westbrook STL |
| 29 | 337th | SP Zach Duke Ari |