| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 2B Chase Utley Phi |
| 2 | 20th | C Brian McCann Atl |
| 3 | 29th | 1B Adrian Gonzalez Bos |
| 4 | 44th | 1B Adam Lind Tor |
| 5 | 53rd | OF Adam Jones Bal |
| 6 | 68th | DH Mike Young Tex |
| 7 | 77th | OF Melvin Upton TB |
| 8 | 92nd | SP Yovani Gallardo Mil |
| 9 | 101st | SS Alexei Ramirez ChA |
| 10 | 116th | SP Matt Cain SF |
| 11 | 125th | OF Cameron Maybin SD |
| 12 | 140th | SP Brett Anderson Oak |
| 13 | 149th | 3B Adrian Beltre Tex |
| 14 | 164th | SP James Shields TB |
| 15 | 173rd | RP Chad Qualls TB |
| 16 | 188th | RP Chris Perez Cle |
| 17 | 197th | 2B Kelly Johnson Ari |
| 18 | 212th | RP Huston Street Col |
| 19 | 221st | SP John Danks ChA |
| 20 | 236th | RP Leo Nunez Fla |
| 21 | 245th | 1B Daric Barton Oak |
| 22 | 260th | OF Chris Young Ari |
| 23 | 269th | SP Kevin Slowey Min |
| 24 | 284th | SS Orlando Cabrera Cin |
| 25 | 293rd | OF Juan Rivera LAA |
| 26 | 308th | C Jarrod Saltalamacchia Bos |
| 27 | 317th | 3B Brandon Wood LAA |
| 28 | 332nd | 1B Troy Glaus Atl |
| 29 | 341st | SP Brad Penny Det |