| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Frank Thomas ChA |
| 2 | 20th | P Randy Johnson Sea |
| 3 | 29th | OF Raul Mondesi LA |
| 4 | 44th | OF Manny Ramirez Cle |
| 5 | 53rd | P Denny Neagle Atl |
| 6 | 68th | 2B Tony Womack Pit |
| 7 | 77th | P Billy Wagner Hou |
| 8 | 92nd | C Darrin Fletcher Tor |
| 9 | 101st | SS Royce Clayton StL |
| 10 | 116th | P Robb Nen SF |
| 11 | 125th | OF Jose Cruz Jr Tor |
| 12 | 140th | P Roberto Hernandez TB |
| 13 | 149th | 3B Willie Greene Cin |
| 14 | 164th | 1B Fred McGriff TB |
| 15 | 173rd | P Carlos Perez Mon |
| 16 | 188th | P Juan Guzman Tor |
| 17 | 197th | C Brad Ausmus Hou |
| 18 | 212th | OF Shawn Green Tor |
| 19 | 221st | 3B Dave Hollins Ana |
| 20 | 236th | P Brian Anderson Ari |
| 21 | 245th | OF Matt Stairs Oak |
| 22 | 260th | 1B Paul Sorrento TB |
| 23 | 269th | P Bret Saberhagen Bos |
| 24 | 284th | P Ken Cloude Sea |
| 25 | 293rd | OF Cliff Floyd Fla |
| 26 | 308th | 1B Wally Joyner SD |