| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Hanley Ramirez Fla |
| 2 | 24th | 1B Justin Morneau Min |
| 3 | 25th | DH Victor Martinez Det |
| 4 | 48th | 1B Carlos Pena ChN |
| 5 | 49th | SP Chris Carpenter StL |
| 6 | 72nd | SP Matt Cain SF |
| 7 | 73rd | 2B Dan Uggla Atl |
| 8 | 96th | RP Brian Wilson SF |
| 9 | 97th | OF Jacoby Ellsbury Bos |
| 10 | 120th | 3B Chone Figgins Sea |
| 11 | 121st | RP Chad Qualls TB |
| 12 | 144th | SP Scott Baker Min |
| 13 | 145th | OF Denard Span Min |
| 14 | 168th | 1B Brad Hawpe SD |
| 15 | 169th | OF Ichiro Suzuki Sea |
| 16 | 192nd | SP Gavin Floyd ChA |
| 17 | 193rd | SP Jorge de la Rosa Col |
| 18 | 216th | 1B Matt LaPorta Cle |
| 19 | 217th | SS Ian Desmond Was |
| 20 | 240th | 2B Orlando Hudson Min |
| 21 | 241st | SS Jhonny Peralta Det |
| 22 | 264th | 1B Daric Barton Oak |
| 23 | 265th | SP Ricky Romero Tor |
| 24 | 288th | C Nick Hundley SD |
| 25 | 289th | SP Paul Maholm Pit |
| 26 | 312th | SP Jake Westbrook STL |
| 27 | 313th | SP Kyle Lohse StL |
| 28 | 336th | OF Dexter Fowler Col |
| 29 | 337th | RP Matt Capps Min |