| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 2B Chase Utley Phi |
| 2 | 19th | SP Tim Lincecum SF |
| 3 | 30th | SP Zack Greinke Mil |
| 4 | 43rd | SP C.C. Sabathia NYA |
| 5 | 54th | RP Jonathan Broxton LAD |
| 6 | 67th | OF Carl Crawford Bos |
| 7 | 78th | SS Jason Bartlett SD |
| 8 | 91st | 2B Gordon Beckham ChA |
| 9 | 102nd | OF Shane Victorino Phi |
| 10 | 115th | SP Max Scherzer Det |
| 11 | 126th | OF Lance Berkman STL |
| 12 | 139th | DH Jason Kubel Min |
| 13 | 150th | C Miguel Montero Ari |
| 14 | 163rd | SP Scott Kazmir LAA |
| 15 | 174th | 1B Paul Konerko ChA |
| 16 | 187th | SP Randy Wolf Mil |
| 17 | 198th | SP Ben Sheets Oak |
| 18 | 211th | 3B Miguel Tejada SD |
| 19 | 222nd | OF Michael Bourn Hou |
| 20 | 235th | SP Jason Frasor Tor |
| 21 | 246th | OF Magglio Ordonez Det |
| 22 | 259th | 1B Troy Glaus Atl |
| 23 | 270th | C John Baker Fla |
| 24 | 283rd | SP Barry Zito SF |
| 25 | 294th | 2B Chris Getz KC |
| 26 | 307th | 3B Garrett Atkins Pit |
| 27 | 318th | SP Luke Hochevar KC |
| 28 | 331st | SP Ryan Rowland-Smith Hou |
| 29 | 342nd | SS Cristian Guzman Tex |