| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Craig Biggio Hou |
| 2 | 13th | 3B Vinny Castilla Col |
| 3 | 36th | C Javy Lopez Atl |
| 4 | 37th | P Trevor Hoffman SD |
| 5 | 60th | OF Ellis Burks Col |
| 6 | 61st | P Tom Glavine Atl |
| 7 | 84th | SS Jose Valentin Mil |
| 8 | 85th | P Chan Ho Park LA |
| 9 | 108th | P Ricky Bottalico Phi |
| 10 | 109th | OF Bernard Gilkey NYN |
| 11 | 132nd | 1B Carlos Delgado Tor |
| 12 | 133rd | P Armando Benitez Bal |
| 13 | 156th | OF Andruw Jones Atl |
| 14 | 157th | P Brett Tomko Cin |
| 15 | 180th | P John Rocker Atl |
| 16 | 181st | 1B Dave Nilsson Mil |
| 17 | 204th | 3B Russ Davis Sea |
| 18 | 205th | P Rick Aguilera Min |
| 19 | 228th | P Jason Dickson Ana |
| 20 | 229th | 3B Mark Lewis Phi |
| 21 | 252nd | C Raul Casanova Det |
| 22 | 253rd | SS Chris Gomez SD |
| 23 | 276th | OF Jacob Cruz SF |
| 24 | 277th | C Todd Hundley NYN |
| 25 | 300th | OF Troy O'Leary Bos |
| 26 | 301st | 1B Rico Brogna Phi |