| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Nomar Garciaparra Bos |
| 2 | 14th | OF Bernie Williams NYA |
| 3 | 35th | P John Smoltz Atl |
| 4 | 38th | C Sandy Alomar Jr. Cle |
| 5 | 59th | P Brad Radke Min |
| 6 | 62nd | P Justin Thompson Det |
| 7 | 83rd | 3B Travis Fryman Cle |
| 8 | 86th | 2B Delino DeShields StL |
| 9 | 107th | P Randy Myers Tor |
| 10 | 110th | OF Brian L. Hunter Det |
| 11 | 131st | 1B John Jaha Mil |
| 12 | 134th | OF Derek Bell Hou |
| 13 | 155th | P Doug Jones Mil |
| 14 | 158th | P Dave Burba Cle |
| 15 | 179th | OF Lance Johnson ChN |
| 16 | 182nd | OF Brian Jordan StL |
| 17 | 203rd | P Kevin Tapani ChN |
| 18 | 206th | P Matt Karchner ChA |
| 19 | 227th | 1B David Segui Sea |
| 20 | 230th | P Al Leiter NYN |
| 21 | 251st | 3B Fernando Tatis Tex |
| 22 | 254th | SS Kevin Stocker TB |
| 23 | 275th | DH Mike Stanley Tor |
| 24 | 278th | C Tim Spehr NYN |
| 25 | 299th | P Jason Bere ChA |
| 26 | 302nd | P Carl Pavano Mon |