| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 3B David Wright NYN |
| 2 | 16th | OF Josh Hamilton Tex |
| 3 | 33rd | 2B Dan Uggla Atl |
| 4 | 40th | OF Shin-Soo Choo Cle |
| 5 | 57th | SS Jimmy Rollins Phi |
| 6 | 64th | DH Kendrys Morales LAA |
| 7 | 81st | SP Roy Oswalt Phi |
| 8 | 88th | 1B Carlos Pena ChN |
| 9 | 105th | SP John Danks ChA |
| 10 | 112th | SP Shaun Marcum Mil |
| 11 | 129th | OF Drew Stubbs Cin |
| 12 | 136th | SP Jaime Garcia StL |
| 13 | 153rd | C Miguel Montero Ari |
| 14 | 160th | SP Brett Myers Hou |
| 15 | 177th | SP Dallas Braden Oak |
| 16 | 184th | 1B Adam LaRoche Was |
| 17 | 201st | SP Ervin Santana LAA |
| 18 | 208th | SP Bronson Arroyo Cin |
| 19 | 225th | OF Denard Span Min |
| 20 | 232nd | RP Craig Kimbrel Atl |
| 21 | 249th | C John Buck Fla |
| 22 | 256th | SS Alex Gonzalez Mil |
| 23 | 273rd | 3B David Freese StL |
| 24 | 280th | SP Michael Pelfrey NYN |
| 25 | 297th | OF Garrett Jones Pit |
| 26 | 304th | SP Jake Westbrook STL |
| 27 | 321st | 2B Dustin Ackley Sea |
| 28 | 328th | RP Brandon Lyon Hou |
| 29 | 345th | RP David Aardsma Sea |