| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Larry Walker Col |
| 2 | 15th | 2B Chuck Knoblauch NYA |
| 3 | 34th | P Kevin Brown SD |
| 4 | 39th | SS Derek Jeter NYA |
| 5 | 58th | P Shawn Estes SF |
| 6 | 63rd | P Jeff Shaw Cin |
| 7 | 82nd | P Jeff Fassero Sea |
| 8 | 87th | C Todd Greene Ana |
| 9 | 106th | OF Vladimir Guerrero Mon |
| 10 | 111th | P Hideo Nomo LA |
| 11 | 130th | 3B Jeff Cirillo Mil |
| 12 | 135th | P Scott Erickson Bal |
| 13 | 154th | 1B Jeff King KC |
| 14 | 159th | OF Geronimo Berroa Cle |
| 15 | 178th | OF Henry Rodriguez ChN |
| 16 | 183rd | 1B Mark Grace ChN |
| 17 | 202nd | P Ugueth Urbina Mon |
| 18 | 207th | 2B Joey Cora Sea |
| 19 | 226th | C Jeff Reed Col |
| 20 | 231st | OF Michael Tucker Atl |
| 21 | 250th | OF Brian S. Giles Cle |
| 22 | 255th | 3B Charlie Hayes SF |
| 23 | 274th | P Chad Ogea Cle |
| 24 | 279th | OF Jon Nunnally Cin |
| 25 | 298th | P Ramon Garcia Hou |
| 26 | 303rd | OF Jeffrey Hammonds Bal |