| Round | Overall | Player |
|---|---|---|
| 1 | 6th | P Mariano Rivera NYA |
| 2 | 19th | P Roger Clemens Tor |
| 3 | 30th | 1B Tino Martinez NYA |
| 4 | 43rd | 2B Mike Lansing Col |
| 5 | 54th | OF Paul O'Neill NYA |
| 6 | 67th | OF Moises Alou Hou |
| 7 | 78th | C Jason Kendall Pit |
| 8 | 91st | P Troy Percival Ana |
| 9 | 102nd | 3B Bobby Bonilla Fla |
| 10 | 115th | SS Mark Grudzielanek Mon |
| 11 | 126th | OF Al Martin Pit |
| 12 | 139th | P Chuck Finley Ana |
| 13 | 150th | OF Tom Goodwin Tex |
| 14 | 163rd | P David Wells NYA |
| 15 | 174th | OF Todd Helton Col |
| 16 | 187th | 2B Quilvio Veras SD |
| 17 | 198th | OF Jose Guillen Pit |
| 18 | 211th | P Jeff D'Amico Mil |
| 19 | 222nd | C John Flaherty TB |
| 20 | 235th | SS Pat Meares Min |
| 21 | 246th | P Willie Blair Ari |
| 22 | 259th | 3B Joe Randa Det |
| 23 | 270th | OF Otis Nixon Min |
| 24 | 283rd | P Mike Fetters Oak |
| 25 | 294th | P Jay Powell Fla |
| 26 | 307th | P Orel Hershiser SF |