| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | P Greg Maddux Atl |
| 3 | 32nd | 1B Andres Galarraga Atl |
| 4 | 41st | OF Tony Gwynn SD |
| 5 | 56th | 3B Ken Caminiti SD |
| 6 | 65th | 2B Eric Young LA |
| 7 | 80th | C Dan Wilson Sea |
| 8 | 89th | OF Brady Anderson Bal |
| 9 | 104th | SS Omar Vizquel Cle |
| 10 | 113th | P Charles Nagy Cle |
| 11 | 128th | P Ramon Martinez LA |
| 12 | 137th | 1B Eric Karros LA |
| 13 | 152nd | P Jimmy Key Bal |
| 14 | 161st | P Livan Hernandez Fla |
| 15 | 176th | P Jamie Moyer Sea |
| 16 | 185th | 1B John Olerud NYN |
| 17 | 200th | P Rick Reed NYN |
| 18 | 209th | 2B Mickey Morandini ChN |
| 19 | 224th | P Cal Eldred Mil |
| 20 | 233rd | C Chris Hoiles Bal |
| 21 | 248th | OF Eric Davis Bal |
| 22 | 257th | 3B Wade Boggs TB |
| 23 | 272nd | P Tom Gordon Bos |
| 24 | 281st | SS Walt Weiss Atl |
| 25 | 296th | P Jeff Suppan Ari |
| 26 | 305th | OF Dave Martinez TB |