| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Justin Upton Ari |
| 2 | 14th | 2B Dan Uggla Atl |
| 3 | 35th | OF Jay Bruce Cin |
| 4 | 38th | SP Ian Kennedy Ari |
| 5 | 59th | SP Daniel Hudson Ari |
| 6 | 62nd | 1B Mark Reynolds Cle |
| 7 | 83rd | C Matt Wieters Bal |
| 8 | 86th | SP Michael Pineda NYA |
| 9 | 107th | SP Mat Latos Cin |
| 10 | 110th | OF Adam Jones Bal |
| 11 | 131st | DH Adam Dunn ChA |
| 12 | 134th | 1B Adam Lind Tor |
| 13 | 155th | SP Hiroki Kuroda NYA |
| 14 | 158th | SP Ivan Nova NYA |
| 15 | 179th | RP Joe Nathan Tex |
| 16 | 182nd | SS Alex Gonzalez Mil |
| 17 | 203rd | RP Kyle Farnsworth TB |
| 18 | 206th | 3B Ryan Roberts TB |
| 19 | 227th | RP Jim Johnson Bal |
| 20 | 230th | OF Jason Bay NYN |
| 21 | 251st | OF Jeff Francoeur KC |
| 22 | 254th | OF Austin Jackson Det |
| 23 | 275th | 1B Chris Davis Bal |
| 24 | 278th | 1B Derrek Lee Pit |
| 25 | 299th | SP Zach Britton Bal |
| 26 | 302nd | C Ramon Hernandez Col |
| 27 | 323rd | SP Josh Collmenter Ari |
| 28 | 326th | SS Alcides Escobar KC |
| 29 | 347th | 2B Orlando Hudson SD |