| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Miguel Cabrera Det |
| 2 | 24th | SP Cliff Lee Phi |
| 3 | 25th | OF Giancarlo Stanton Mia |
| 4 | 48th | 3B Brett Lawrie Tor |
| 5 | 49th | SP Cole Hamels Phi |
| 6 | 72nd | C Brian McCann Atl |
| 7 | 73rd | SP Adam Wainwright StL |
| 8 | 96th | 1B Ike Davis NYN |
| 9 | 97th | SP Jordan Zimmermann Was |
| 10 | 120th | OF Carl Crawford LAD |
| 11 | 121st | 1B Michael Cuddyer Col |
| 12 | 144th | DH Kendrys Morales Sea |
| 13 | 145th | SP Cory Luebke SD |
| 14 | 168th | RP Sergio Santos Tor |
| 15 | 169th | SS Alexei Ramirez ChA |
| 16 | 192nd | OF Mark Trumbo LAA |
| 17 | 193rd | 2B Jason Kipnis Cle |
| 18 | 216th | 2B Kelly Johnson Tor |
| 19 | 217th | OF Vernon Wells LAA |
| 20 | 240th | RP Kenley Jansen LAD |
| 21 | 241st | RP Frank Francisco NYN |
| 22 | 264th | SP Carlos Zambrano Mia |
| 23 | 265th | SP Edison Volquez SD |
| 24 | 288th | SP Andy Pettitte NYA |
| 25 | 289th | OF Bryce Harper Was |
| 26 | 312th | C Ramon Hernandez Col |
| 27 | 313th | OF Jason Bay NYN |
| 28 | 336th | 3B Jack Hannahan Cle |
| 29 | 337th | 2B Brian Roberts Bal |