| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SS Troy Tulowitzki Col |
| 2 | 22nd | SP Clayton Kershaw LAD |
| 3 | 27th | 3B Adrian Beltre Tex |
| 4 | 46th | 2B Dan Uggla Atl |
| 5 | 51st | C Buster Posey SF |
| 6 | 70th | DH Lance Berkman Tex |
| 7 | 75th | RP Jon Papelbon Phi |
| 8 | 94th | OF Melvin Upton Atl |
| 9 | 99th | SP Tommy Hanson LAA |
| 10 | 118th | OF Adam Jones Bal |
| 11 | 123rd | OF John Mayberry Phi |
| 12 | 142nd | SP Trevor Cahill Ari |
| 13 | 147th | 1B Paul Goldschmidt Ari |
| 14 | 166th | RP Andrew Bailey Bos |
| 15 | 171st | SP Chris Sale ChA |
| 16 | 190th | SP Shaun Marcum Mil |
| 17 | 195th | OF Ichiro Suzuki NYA |
| 18 | 214th | RP Sean Marshall Cin |
| 19 | 219th | 2B Marcos Scutaro SF |
| 20 | 238th | RP Greg Holland KC |
| 21 | 243rd | SP Philip Hughes NYA |
| 22 | 262nd | C Jonathan Lucroy Mil |
| 23 | 267th | SP Jonathan Sanchez Col |
| 24 | 286th | OF Brett Gardner NYA |
| 25 | 291st | 1B Allen Craig StL |
| 26 | 310th | 3B Scott Rolen Cin |
| 27 | 315th | 3B Nolan Arenado Col |
| 28 | 334th | SP Jeremy Guthrie KC |
| 29 | 339th | SS Alcides Escobar KC |