| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Larry Walker Col |
| 2 | 23rd | C Ivan Rodriguez Tex |
| 3 | 26th | OF Dante Bichette Col |
| 4 | 47th | P Darryl Kile Col |
| 5 | 50th | OF Moises Alou Hou |
| 6 | 71st | P Andy Pettitte NYA |
| 7 | 74th | P Randy Myers Tor |
| 8 | 95th | 2B Ray Durham ChA |
| 9 | 98th | 1B Fred McGriff TB |
| 10 | 119th | P Charles Nagy Cle |
| 11 | 122nd | SS Edgar Renteria Fla |
| 12 | 143rd | 3B Todd Zeile LA |
| 13 | 146th | P Livan Hernandez Fla |
| 14 | 167th | P Todd Jones Det |
| 15 | 170th | P Wilson Alvarez TB |
| 16 | 191st | 1B Dave Nilsson Mil |
| 17 | 194th | P Antonio Osuna LA |
| 18 | 215th | 3B Ron Coomer Min |
| 19 | 218th | SS Kevin Elster Tex |
| 20 | 239th | C Chris Widger Mon |
| 21 | 242nd | OF Troy O'Leary Bos |
| 22 | 263rd | 1B Lee Stevens Tex |
| 23 | 266th | 1B Will Clark Tex |
| 24 | 287th | 2B Kevin Sefcik Phi |
| 25 | 290th | P Mike Fetters Oak |
| 26 | 311th | DH Cecil Fielder Ana |