| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Chipper Jones Atl |
| 2 | 14th | DH Edgar Martinez Sea |
| 3 | 35th | C Javy Lopez Atl |
| 4 | 38th | 1B Tony Clark Det |
| 5 | 59th | OF Ray Lankford StL |
| 6 | 62nd | 2B Eric Young LA |
| 7 | 83rd | SS Jose Valentin Mil |
| 8 | 86th | P Mark Wohlers Atl |
| 9 | 107th | P David Wells NYA |
| 10 | 110th | 1B J.T. Snow SF |
| 11 | 131st | OF Derek Bell Hou |
| 12 | 134th | 2B Quilvio Veras SD |
| 13 | 155th | P Roberto Hernandez TB |
| 14 | 158th | OF Garret Anderson Ana |
| 15 | 179th | P Kirk Rueter SF |
| 16 | 182nd | P Darren Dreifort LA |
| 17 | 203rd | 3B Fernando Tatis Tex |
| 18 | 206th | OF Karim Garcia Ari |
| 19 | 227th | P Ken Hill Ana |
| 20 | 230th | C Brad Ausmus Hou |
| 21 | 251st | 1B Eduardo Perez Cin |
| 22 | 254th | SS Desi Relaford Phi |
| 23 | 275th | 2B Miguel Cairo TB |
| 24 | 278th | OF Devon White Ari |
| 25 | 299th | P Jason Schmidt Pit |
| 26 | 302nd | P Brian Rose Bos |