| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Jeff Bagwell Hou |
| 2 | 24th | OF Bernie Williams NYA |
| 3 | 25th | P Mike Mussina Bal |
| 4 | 48th | OF Jose Cruz Jr Tor |
| 5 | 49th | 3B Edgardo Alfonzo NYN |
| 6 | 72nd | SS Jeff Blauser ChN |
| 7 | 73rd | P John Wetteland Tex |
| 8 | 96th | C Charles Johnson Fla |
| 9 | 97th | P Andy Benes Ari |
| 10 | 120th | OF Steve Finley SD |
| 11 | 121st | 3B Jeff Cirillo Mil |
| 12 | 144th | P John Franco NYN |
| 13 | 145th | P Darren Oliver Tex |
| 14 | 168th | P Mike Hampton Hou |
| 15 | 169th | 2B Carlos Baerga NYN |
| 16 | 192nd | OF Marquis Grissom Mil |
| 17 | 193rd | 1B Brad Fullmer Mon |
| 18 | 216th | P Osvaldo Fernandez SF |
| 19 | 217th | C Brian Johnson SF |
| 20 | 240th | 3B Bill Mueller SF |
| 21 | 241st | OF Quinton McCracken TB |
| 22 | 264th | P Chris Holt Hou |
| 23 | 265th | OF Jeffrey Hammonds Bal |
| 24 | 288th | P Frank Castillo Det |
| 25 | 289th | P Terry Adams ChN |
| 26 | 312th | DH Reggie Jefferson Bos |