| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Barry Bonds SF |
| 2 | 15th | 1B Mark McGwire StL |
| 3 | 34th | P Roger Clemens Tor |
| 4 | 39th | OF Gary Sheffield Fla |
| 5 | 58th | P David Cone NYA |
| 6 | 63rd | OF Ben Grieve Oak |
| 7 | 82nd | OF Jay Buhner Sea |
| 8 | 87th | OF Jeromy Burnitz Mil |
| 9 | 106th | SS Barry Larkin Cin |
| 10 | 111th | P Dennys Reyes LA |
| 11 | 130th | C Chris Hoiles Bal |
| 12 | 135th | 1B Jeff King KC |
| 13 | 154th | 3B Willie Greene Cin |
| 14 | 159th | 2B Joey Cora Sea |
| 15 | 178th | P Doug Jones Mil |
| 16 | 183rd | 1B John Olerud NYN |
| 17 | 202nd | OF Eric Davis Bal |
| 18 | 207th | P Carl Pavano Mon |
| 19 | 226th | 3B Kevin Orie ChN |
| 20 | 231st | P Dustin Hermanson Mon |
| 21 | 250th | P Armando Benitez Bal |
| 22 | 255th | P Rick Aguilera Min |
| 23 | 274th | OF Cliff Floyd Fla |
| 24 | 279th | 1B Mario Valdez ChA |
| 25 | 298th | C Bobby Estalella Phi |
| 26 | 303rd | OF Jon Nunnally Cin |