| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 2B Craig Biggio Hou |
| 2 | 18th | SS Derek Jeter NYA |
| 3 | 31st | 3B Ken Caminiti SD |
| 4 | 42nd | 1B Darin Erstad Ana |
| 5 | 55th | OF Tony Gwynn SD |
| 6 | 66th | C Dan Wilson Sea |
| 7 | 79th | P Robb Nen SF |
| 8 | 90th | OF Brian L. Hunter Det |
| 9 | 103rd | 1B Carlos Delgado Tor |
| 10 | 114th | P Justin Thompson Det |
| 11 | 127th | OF Rondell White Mon |
| 12 | 138th | P Rod Beck ChN |
| 13 | 151st | OF Geronimo Berroa Cle |
| 14 | 162nd | OF Bernard Gilkey NYN |
| 15 | 175th | OF Shannon Stewart Tor |
| 16 | 186th | P Jamie Moyer Sea |
| 17 | 199th | P Mark Clark ChN |
| 18 | 210th | OF Lance Johnson ChN |
| 19 | 223rd | 3B Russ Davis Sea |
| 20 | 234th | P Pedro Astacio Col |
| 21 | 247th | 2B Mickey Morandini ChN |
| 22 | 258th | P James Baldwin ChA |
| 23 | 271st | P Heathcliff Slocumb Sea |
| 24 | 282nd | 1B Paul Sorrento TB |
| 25 | 295th | P Cal Eldred Mil |
| 26 | 306th | P Tim Wakefield Bos |