| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Mark McGwire StL |
| 2 | 14th | 3B Vinny Castilla Col |
| 3 | 35th | OF Sammy Sosa ChN |
| 4 | 38th | OF Dante Bichette Col |
| 5 | 59th | C Sandy Alomar Jr. Cle |
| 6 | 62nd | OF Bob Higginson Det |
| 7 | 83rd | OF Tony Gwynn SD |
| 8 | 86th | SS Omar Vizquel Cle |
| 9 | 107th | P Ramon Martinez LA |
| 10 | 110th | P Hideo Nomo LA |
| 11 | 131st | 2B Tony Womack Pit |
| 12 | 134th | P Todd Stottlemyre StL |
| 13 | 155th | P David Wells NYA |
| 14 | 158th | P Pedro Astacio Col |
| 15 | 179th | C Jim Leyritz Bos |
| 16 | 182nd | P Hector Carrasco Min |
| 17 | 203rd | OF Jason Giambi Oak |
| 18 | 206th | OF Ron Gant StL |
| 19 | 227th | DH Paul Molitor Min |
| 20 | 230th | P Doug Jones Mil |
| 21 | 251st | 3B Charlie Hayes SF |
| 22 | 254th | P Tim Wakefield Bos |
| 23 | 275th | P Chad Ogea Cle |
| 24 | 278th | P Donovan Osborne StL |
| 25 | 299th | P John Smiley Cle |
| 26 | 302nd | P Doug Drabek Bal |