| Round | Overall | Player |
|---|---|---|
| 1 | 12th | DH Juan Gonzalez Tex |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | 1B Andres Galarraga Atl |
| 4 | 37th | 3B Matt Williams Ari |
| 5 | 60th | SS Jay Bell Ari |
| 6 | 61st | OF Rusty Greer Tex |
| 7 | 84th | P Darryl Kile Col |
| 8 | 85th | P Kevin Appier KC |
| 9 | 108th | OF Rondell White Mon |
| 10 | 109th | C Dan Wilson Sea |
| 11 | 132nd | P Ricky Bottalico Phi |
| 12 | 133rd | P Charles Nagy Cle |
| 13 | 156th | 3B Jeff Cirillo Mil |
| 14 | 157th | 1B Carlos Delgado Tor |
| 15 | 180th | P Bobby J. Jones NYN |
| 16 | 181st | C Darrin Fletcher Tor |
| 17 | 204th | P Darren Oliver Tex |
| 18 | 205th | P John Burkett Tex |
| 19 | 228th | P Cal Eldred Mil |
| 20 | 229th | P Heathcliff Slocumb Sea |
| 21 | 252nd | OF B.J. Surhoff Bal |
| 22 | 253rd | SS Kevin Elster Tex |
| 23 | 276th | OF Michael Tucker Atl |
| 24 | 277th | 2B Scott Spiezio Oak |
| 25 | 300th | P Kelvim Escobar Tor |
| 26 | 301st | 3B Aramis Ramirez Pit |