| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Barry Bonds SF |
| 2 | 21st | C Ivan Rodriguez Tex |
| 3 | 28th | OF Tim Salmon Ana |
| 4 | 45th | P John Wetteland Tex |
| 5 | 52nd | 3B Scott Rolen Phi |
| 6 | 69th | 1B Rafael Palmeiro Bal |
| 7 | 76th | P Randy Myers Tor |
| 8 | 93rd | P Jeff Shaw Cin |
| 9 | 100th | 2B Eric Young LA |
| 10 | 117th | SS Neifi Perez Col |
| 11 | 124th | P Matt Morris StL |
| 12 | 141st | P Jose Mesa Cle |
| 13 | 148th | 1B J.T. Snow SF |
| 14 | 165th | OF Marquis Grissom Mil |
| 15 | 172nd | P Chris Holt Hou |
| 16 | 189th | SS Edgar Renteria Fla |
| 17 | 196th | P Wilson Alvarez TB |
| 18 | 213th | OF Tom Goodwin Tex |
| 19 | 220th | P Jeff Montgomery KC |
| 20 | 237th | 3B Adrian Beltre LA |
| 21 | 244th | 1B Jeff Conine KC |
| 22 | 261st | P Scott Erickson Bal |
| 23 | 268th | P Geremi Gonzalez ChN |
| 24 | 285th | 2B Tony Phillips Ana |
| 25 | 292nd | P Brian Anderson Ari |
| 26 | 309th | OF Chris Stynes Cin |