| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Mo Vaughn Bos |
| 2 | 15th | P Mike Mussina Bal |
| 3 | 34th | SS Derek Jeter NYA |
| 4 | 39th | 3B Ken Caminiti SD |
| 5 | 58th | P Tom Glavine Atl |
| 6 | 63rd | OF Reggie Sanders Cin |
| 7 | 82nd | OF Mike Cameron ChA |
| 8 | 87th | OF Andruw Jones Atl |
| 9 | 106th | P Billy Wagner Hou |
| 10 | 111th | P Jaret Wright Cle |
| 11 | 130th | C Jason Kendall Pit |
| 12 | 135th | P Todd Jones Det |
| 13 | 154th | P Mike Hampton Hou |
| 14 | 159th | OF Bernard Gilkey NYN |
| 15 | 178th | SS Shawon Dunston Cle |
| 16 | 183rd | 1B Kevin Young Pit |
| 17 | 202nd | P Dustin Hermanson Mon |
| 18 | 207th | OF Garret Anderson Ana |
| 19 | 226th | P Darren Dreifort LA |
| 20 | 231st | 1B Dave Nilsson Mil |
| 21 | 250th | P Esteban Loaiza Pit |
| 22 | 255th | 2B Joey Cora Sea |
| 23 | 274th | P Paul Spoljaric Sea |
| 24 | 279th | P Tom Gordon Bos |
| 25 | 298th | C Eli Marrero StL |
| 26 | 303rd | P Tony Saunders TB |