| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Sea |
| 2 | 24th | OF Bernie Williams NYA |
| 3 | 25th | 3B Chipper Jones Atl |
| 4 | 48th | OF Gary Sheffield Fla |
| 5 | 49th | 2B Roberto Alomar Bal |
| 6 | 72nd | P David Cone NYA |
| 7 | 73rd | P Robb Nen SF |
| 8 | 96th | C Todd Hundley NYN |
| 9 | 97th | OF Vladimir Guerrero Mon |
| 10 | 120th | P Rod Beck ChN |
| 11 | 121st | P Armando Benitez Bal |
| 12 | 144th | OF Brian Jordan StL |
| 13 | 145th | P Alan Benes StL |
| 14 | 168th | 1B Jeff King KC |
| 15 | 169th | P Brett Tomko Cin |
| 16 | 192nd | 1B Fred McGriff TB |
| 17 | 193rd | P Jamie Moyer Sea |
| 18 | 216th | P Kevin Tapani ChN |
| 19 | 217th | DH Jose Canseco Tor |
| 20 | 240th | P Rick Reed NYN |
| 21 | 241st | 3B Todd Walker Min |
| 22 | 264th | C Benito Santiago Tor |
| 23 | 265th | OF Eric Davis Bal |
| 24 | 288th | C Brad Ausmus Hou |
| 25 | 289th | P Hideki Irabu NYA |
| 26 | 312th | P Ramon Garcia Hou |