| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Ken Griffey Jr Sea |
| 2 | 22nd | 1B Jim Thome Cle |
| 3 | 27th | P Kevin Brown SD |
| 4 | 46th | OF Raul Mondesi LA |
| 5 | 51st | OF Ray Lankford StL |
| 6 | 70th | OF Ben Grieve Oak |
| 7 | 75th | 2B Jeff Kent SF |
| 8 | 94th | C Charles Johnson Fla |
| 9 | 99th | OF Todd Helton Col |
| 10 | 118th | 3B Todd Zeile LA |
| 11 | 123rd | P Carlos Perez Mon |
| 12 | 142nd | 1B Paul Konerko LA |
| 13 | 147th | P Ugueth Urbina Mon |
| 14 | 166th | SS Alex Gonzalez Tor |
| 15 | 171st | P Jason Dickson Ana |
| 16 | 190th | P Ken Cloude Sea |
| 17 | 195th | 3B Cal Ripken Bal |
| 18 | 214th | P Juan Guzman Tor |
| 19 | 219th | P Victor Santos Det |
| 20 | 238th | P Jack McDowell Ana |
| 21 | 243rd | SS Miguel Tejada Oak |
| 22 | 262nd | P Carl Pavano Mon |
| 23 | 267th | OF Karim Garcia Ari |
| 24 | 286th | P Scott Karl Mil |
| 25 | 291st | 2B Tony Graffanino Atl |
| 26 | 310th | P Bartolo Colon Cle |