| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 1B Frank Thomas ChA |
| 2 | 20th | 2B Chuck Knoblauch NYA |
| 3 | 29th | P Trevor Hoffman SD |
| 4 | 44th | C Javy Lopez Atl |
| 5 | 53rd | P Ismael Valdez LA |
| 6 | 68th | OF Brian L. Hunter Det |
| 7 | 77th | 3B Dean Palmer KC |
| 8 | 92nd | SS Mark Grudzielanek Mon |
| 9 | 101st | P Roberto Hernandez TB |
| 10 | 116th | 1B Eric Karros LA |
| 11 | 125th | OF Ryan Klesko Atl |
| 12 | 140th | P John Franco NYN |
| 13 | 149th | P Jimmy Key Bal |
| 14 | 164th | OF Marty Cordova Min |
| 15 | 173rd | P Matt Karchner ChA |
| 16 | 188th | 1B Paul Sorrento TB |
| 17 | 197th | C Chris Hoiles Bal |
| 18 | 212th | P Kirk Rueter SF |
| 19 | 221st | OF Brian McRae NYN |
| 20 | 236th | 3B Joe Randa Det |
| 21 | 245th | P Mark Clark ChN |
| 22 | 260th | OF Jon Nunnally Cin |
| 23 | 269th | P Sterling Hitchcock SD |
| 24 | 284th | 2B Carlos Baerga NYN |
| 25 | 293rd | OF Greg Vaughn SD |
| 26 | 308th | OF Gregg Jefferies Phi |