| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Frank Thomas ChA |
| 2 | 19th | 3B Vinny Castilla Col |
| 3 | 30th | P Mike Mussina Bal |
| 4 | 43rd | P Randy Myers Tor |
| 5 | 54th | 2B Mike Lansing Col |
| 6 | 67th | P Roberto Hernandez TB |
| 7 | 78th | OF Moises Alou Hou |
| 8 | 91st | C Sandy Alomar Jr. Cle |
| 9 | 102nd | P Andy Benes Ari |
| 10 | 115th | OF Ben Grieve Oak |
| 11 | 126th | P Jeff Brantley StL |
| 12 | 139th | C Jason Kendall Pit |
| 13 | 150th | OF Jeromy Burnitz Mil |
| 14 | 163rd | P Matt Karchner ChA |
| 15 | 174th | P Scott Karl Mil |
| 16 | 187th | 1B John Jaha Mil |
| 17 | 198th | P Dave Burba Cle |
| 18 | 211th | SS Pat Meares Min |
| 19 | 222nd | 3B Todd Walker Min |
| 20 | 235th | OF Shannon Stewart Tor |
| 21 | 246th | P Ken Cloude Sea |
| 22 | 259th | 1B Brad Fullmer Mon |
| 23 | 270th | OF Troy O'Leary Bos |
| 24 | 283rd | P Tom Candiotti Oak |
| 25 | 294th | 3B Fernando Tatis Tex |
| 26 | 307th | 2B Fernando Vina Mil |
| 27 | 318th | P Woody Williams Tor |