| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Barry Bonds SF |
| 2 | 20th | 2B Chuck Knoblauch NYA |
| 3 | 29th | P Andy Pettitte NYA |
| 4 | 44th | P Curt Schilling Phi |
| 5 | 53rd | P David Cone NYA |
| 6 | 68th | 3B Scott Rolen Phi |
| 7 | 77th | 1B J.T. Snow SF |
| 8 | 92nd | OF Bob Higginson Det |
| 9 | 101st | OF Steve Finley SD |
| 10 | 116th | SS Barry Larkin Cin |
| 11 | 125th | OF Gary Sheffield Fla |
| 12 | 140th | P Kirk Rueter SF |
| 13 | 149th | C Jim Leyritz Bos |
| 14 | 164th | P Jaime Navarro ChA |
| 15 | 173rd | P Bobby J. Jones NYN |
| 16 | 188th | 1B Fred McGriff TB |
| 17 | 197th | OF Brian Jordan StL |
| 18 | 212th | 3B Scott Brosius NYA |
| 19 | 221st | P Mark Clark ChN |
| 20 | 236th | OF Lance Johnson ChN |
| 21 | 245th | P Cal Eldred Mil |
| 22 | 260th | OF Eric Davis Bal |
| 23 | 269th | P Victor Santos Det |
| 24 | 284th | SS Walt Weiss Atl |
| 25 | 293rd | P Mike Remlinger Cin |
| 26 | 308th | 1B Paul Sorrento TB |
| 27 | 317th | P Bret Saberhagen Bos |