| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Mark McGwire StL |
| 2 | 15th | P Randy Johnson Sea |
| 3 | 34th | OF Tony Gwynn SD |
| 4 | 39th | P Troy Percival Ana |
| 5 | 58th | 2B Delino DeShields StL |
| 6 | 63rd | C Javy Lopez Atl |
| 7 | 82nd | 3B Todd Zeile LA |
| 8 | 87th | OF Jay Buhner Sea |
| 9 | 106th | SS Royce Clayton StL |
| 10 | 111th | P Andy Ashby SD |
| 11 | 130th | P Rich Loiselle Pit |
| 12 | 135th | OF Andruw Jones Atl |
| 13 | 154th | P Francisco Cordova Pit |
| 14 | 159th | OF Geronimo Berroa Cle |
| 15 | 178th | 3B Bobby Bonilla Fla |
| 16 | 183rd | 1B Jeff King KC |
| 17 | 202nd | OF Al Martin Pit |
| 18 | 207th | P Jack McDowell Ana |
| 19 | 226th | OF Shawn Green Tor |
| 20 | 231st | C Jeff Reed Col |
| 21 | 250th | P Esteban Loaiza Pit |
| 22 | 255th | OF Jose Guillen Pit |
| 23 | 274th | 1B Paul Konerko LA |
| 24 | 279th | P Jason Bere ChA |
| 25 | 298th | 2B Tony Fernandez Tor |
| 26 | 303rd | P Doug Drabek Bal |
| 27 | 322nd | P Mark Langston SD |