| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | OF Bernie Williams NYA |
| 3 | 25th | 1B Jim Thome Cle |
| 4 | 48th | P Pat Hentgen Tor |
| 5 | 49th | SS Derek Jeter NYA |
| 6 | 72nd | P Jeff Shaw Cin |
| 7 | 73rd | 2B John Valentin Bos |
| 8 | 96th | P Brad Radke Min |
| 9 | 97th | 2B Damion Easley Det |
| 10 | 120th | P Todd Jones Det |
| 11 | 121st | OF Bernard Gilkey NYN |
| 12 | 144th | P Jaret Wright Cle |
| 13 | 145th | DH Cecil Fielder Ana |
| 14 | 168th | P Ken Hill Ana |
| 15 | 169th | C Terry Steinbach Min |
| 16 | 192nd | OF Derek Bell Hou |
| 17 | 193rd | P Tim Wakefield Bos |
| 18 | 216th | 1B Kevin Young Pit |
| 19 | 217th | 2B Scott Spiezio Oak |
| 20 | 240th | P Mike Fetters Oak |
| 21 | 241st | OF Magglio Ordonez ChA |
| 22 | 264th | 3B Gary Gaetti StL |
| 23 | 265th | P Jose Mercedes Mil |
| 24 | 288th | SS Chris Gomez SD |
| 25 | 289th | OF Greg Vaughn SD |
| 26 | 312th | C Bobby Estalella Phi |
| 27 | 313th | P Brian Rose Bos |