| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Larry Walker Col |
| 2 | 17th | 1B Mo Vaughn Bos |
| 3 | 32nd | 3B Matt Williams Ari |
| 4 | 41st | P Tom Glavine Atl |
| 5 | 56th | P Mark Wohlers Atl |
| 6 | 65th | P Ismael Valdez LA |
| 7 | 80th | OF Ellis Burks Col |
| 8 | 89th | OF Jose Cruz Jr Tor |
| 9 | 104th | 2B Ray Durham ChA |
| 10 | 113th | C Charles Johnson Fla |
| 11 | 128th | SS Neifi Perez Col |
| 12 | 137th | P Alan Benes StL |
| 13 | 152nd | P Joey Hamilton SD |
| 14 | 161st | P Ugueth Urbina Mon |
| 15 | 176th | OF Butch Huskey NYN |
| 16 | 185th | P Brett Tomko Cin |
| 17 | 200th | OF Ron Gant StL |
| 18 | 209th | P Jeff Suppan Ari |
| 19 | 224th | 3B Willie Greene Cin |
| 20 | 233rd | 1B John Olerud NYN |
| 21 | 248th | P James Baldwin ChA |
| 22 | 257th | P Dwight Gooden Cle |
| 23 | 272nd | P Dustin Hermanson Mon |
| 24 | 281st | SS Alex Gonzalez Tor |
| 25 | 296th | OF Jon Nunnally Cin |
| 26 | 305th | C Mike Sweeney KC |
| 27 | 320th | P Orel Hershiser SF |