| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SS Alex Rodriguez Sea |
| 2 | 13th | 2B Craig Biggio Hou |
| 3 | 36th | P Mariano Rivera NYA |
| 4 | 37th | P Billy Wagner Hou |
| 5 | 60th | P Chan Ho Park LA |
| 6 | 61st | P Justin Thompson Det |
| 7 | 84th | 3B Dean Palmer KC |
| 8 | 85th | OF Brady Anderson Bal |
| 9 | 108th | 1B Eric Karros LA |
| 10 | 109th | P Matt Morris StL |
| 11 | 132nd | OF Ryan Klesko Atl |
| 12 | 133rd | DH Chili Davis NYA |
| 13 | 156th | 1B Mark Grace ChN |
| 14 | 157th | C Chris Hoiles Bal |
| 15 | 180th | OF Matt Stairs Oak |
| 16 | 181st | 1B Dave Nilsson Mil |
| 17 | 204th | C Todd Hundley NYN |
| 18 | 205th | SS Jose Valentin Mil |
| 19 | 228th | OF B.J. Surhoff Bal |
| 20 | 229th | OF Chris Stynes Cin |
| 21 | 252nd | P Kelvim Escobar Tor |
| 22 | 253rd | 3B Kevin Orie ChN |
| 23 | 276th | C Eli Marrero StL |
| 24 | 277th | P John Thomson Col |
| 25 | 300th | OF Yamil Benitez Ari |
| 26 | 301st | OF Orlando Merced Min |
| 27 | 324th | P Jason Schmidt Pit |