| Round | Overall | Player |
|---|---|---|
| 1 | 7th | SS Nomar Garciaparra Bos |
| 2 | 18th | 3B Vinny Castilla Col |
| 3 | 31st | 1B Jim Thome Cle |
| 4 | 42nd | DH Edgar Martinez Sea |
| 5 | 55th | OF Ben Grieve Oak |
| 6 | 66th | C Javy Lopez Atl |
| 7 | 79th | C Charles Johnson Fla |
| 8 | 90th | P Andy Benes Ari |
| 9 | 103rd | P Ricky Bottalico Phi |
| 10 | 114th | P Jamie Moyer Sea |
| 11 | 127th | OF Ryan Klesko Atl |
| 12 | 138th | P Livan Hernandez Fla |
| 13 | 151st | P Rick Reed NYN |
| 14 | 162nd | P Brett Tomko Cin |
| 15 | 175th | 2B Scott Spiezio Oak |
| 16 | 186th | SS Jose Valentin Mil |
| 17 | 199th | OF Jason Giambi Oak |
| 18 | 210th | 3B Fernando Tatis Tex |
| 19 | 223rd | OF Troy O'Leary Bos |
| 20 | 234th | OF Jon Nunnally Cin |
| 21 | 247th | P Jeff D'Amico Mil |
| 22 | 258th | 3B Tim Naehring Bos |
| 23 | 271st | C Eli Marrero StL |
| 24 | 282nd | P Ken Cloude Sea |
| 25 | 295th | 2B Craig Counsell Fla |
| 26 | 306th | OF Rob Ducey Sea |
| 27 | 319th | P Mark Portugal Phi |