| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B Chipper Jones Atl |
| 2 | 13th | 2B Chuck Knoblauch NYA |
| 3 | 36th | 1B Tony Clark Det |
| 4 | 37th | P Mariano Rivera NYA |
| 5 | 60th | OF Moises Alou Hou |
| 6 | 61st | OF Bob Higginson Det |
| 7 | 84th | P Hideo Nomo LA |
| 8 | 85th | P Jeff Shaw Cin |
| 9 | 108th | P Brad Radke Min |
| 10 | 109th | C Sandy Alomar Jr. Cle |
| 11 | 132nd | P Jaret Wright Cle |
| 12 | 133rd | 1B Carlos Delgado Tor |
| 13 | 156th | OF Jeromy Burnitz Mil |
| 14 | 157th | OF Marquis Grissom Mil |
| 15 | 180th | SS Pat Meares Min |
| 16 | 181st | 3B Dave Hollins Ana |
| 17 | 204th | P Jason Dickson Ana |
| 18 | 205th | P Cal Eldred Mil |
| 19 | 228th | 1B Fred McGriff TB |
| 20 | 229th | 2B Jose Offerman KC |
| 21 | 252nd | OF Chris Stynes Cin |
| 22 | 253rd | P Kirk Rueter SF |
| 23 | 276th | OF Michael Tucker Atl |
| 24 | 277th | P Aaron Sele Tex |
| 25 | 300th | C Mike Sweeney KC |
| 26 | 301st | OF Shannon Stewart Tor |
| 27 | 324th | SS Alex Gonzalez Tor |