| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Larry Walker Col |
| 2 | 22nd | 3B Ken Caminiti SD |
| 3 | 27th | P Mike Mussina Bal |
| 4 | 46th | 2B Damion Easley Det |
| 5 | 51st | P Mark Wohlers Atl |
| 6 | 70th | OF Tony Gwynn SD |
| 7 | 75th | P Justin Thompson Det |
| 8 | 94th | 1B David Segui Sea |
| 9 | 99th | SS Mark Grudzielanek Mon |
| 10 | 118th | P Ramon Martinez LA |
| 11 | 123rd | C John Flaherty TB |
| 12 | 142nd | P Jimmy Key Bal |
| 13 | 147th | OF Reggie Sanders Cin |
| 14 | 166th | 1B John Jaha Mil |
| 15 | 171st | P Darren Dreifort LA |
| 16 | 190th | P Todd Stottlemyre StL |
| 17 | 195th | OF Henry Rodriguez ChN |
| 18 | 214th | C Terry Steinbach Min |
| 19 | 219th | 2B Quilvio Veras SD |
| 20 | 238th | P Jose Rosado KC |
| 21 | 243rd | OF Quinton McCracken TB |
| 22 | 262nd | P Mike Jackson Cle |
| 23 | 267th | 3B Wade Boggs TB |
| 24 | 286th | P Arthur Rhodes Bal |
| 25 | 291st | OF Luis Gonzalez Det |
| 26 | 310th | P Bret Saberhagen Bos |
| 27 | 315th | OF Todd Hollandsworth LA |