| Round | Overall | Player |
|---|---|---|
| 1 | 5th | OF Barry Bonds SF |
| 2 | 20th | C Ivan Rodriguez Tex |
| 3 | 29th | 3B Matt Williams Ari |
| 4 | 44th | 1B Tino Martinez NYA |
| 5 | 53rd | P John Wetteland Tex |
| 6 | 68th | SS Barry Larkin Cin |
| 7 | 77th | OF Dante Bichette Col |
| 8 | 92nd | P Darryl Kile Col |
| 9 | 101st | 2B Delino DeShields StL |
| 10 | 116th | P Roberto Hernandez TB |
| 11 | 125th | P John Franco NYN |
| 12 | 140th | P Doug Jones Mil |
| 13 | 149th | P Ugueth Urbina Mon |
| 14 | 164th | 1B J.T. Snow SF |
| 15 | 173rd | OF Al Martin Pit |
| 16 | 188th | P Jeff Montgomery KC |
| 17 | 197th | 3B Bobby Bonilla Fla |
| 18 | 212th | P Dennis Eckersley Bos |
| 19 | 221st | OF Bernard Gilkey NYN |
| 20 | 236th | OF Lance Johnson ChN |
| 21 | 245th | OF Geronimo Berroa Cle |
| 22 | 260th | P Jerry Dipoto Col |
| 23 | 269th | C Eddie Taubensee Cin |
| 24 | 284th | 3B Ron Coomer Min |
| 25 | 293rd | 1B Rico Brogna Phi |
| 26 | 308th | SS Jose Vizcaino LA |
| 27 | 317th | P Steve Avery Bos |