| Round | Overall | Player |
|---|---|---|
| 1 | 1st | OF Ken Griffey Jr Sea |
| 2 | 24th | OF Manny Ramirez Cle |
| 3 | 25th | SS Derek Jeter NYA |
| 4 | 48th | P Kevin Brown SD |
| 5 | 49th | 1B Rafael Palmeiro Bal |
| 6 | 72nd | 3B Dean Palmer KC |
| 7 | 73rd | 2B Ray Durham ChA |
| 8 | 96th | C Jason Kendall Pit |
| 9 | 97th | P Kevin Appier KC |
| 10 | 120th | OF Vladimir Guerrero Mon |
| 11 | 121st | P Shane Reynolds Hou |
| 12 | 144th | OF Derek Bell Hou |
| 13 | 145th | P Francisco Cordova Pit |
| 14 | 168th | 3B Willie Greene Cin |
| 15 | 169th | P Kelvim Escobar Tor |
| 16 | 192nd | P Chuck Finley Ana |
| 17 | 193rd | OF Marty Cordova Min |
| 18 | 216th | P James Baldwin ChA |
| 19 | 217th | P Tom Candiotti Oak |
| 20 | 240th | P Jack McDowell Ana |
| 21 | 241st | DH Jose Canseco Tor |
| 22 | 264th | P Kenny Rogers Oak |
| 23 | 265th | 1B Will Clark Tex |
| 24 | 288th | P Mark Gardner SF |
| 25 | 289th | C Chris Widger Mon |
| 26 | 312th | P Tim Belcher KC |
| 27 | 313th | P Doug Drabek Bal |