| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 1B Frank Thomas ChA |
| 2 | 21st | 3B Vinny Castilla Col |
| 3 | 28th | OF Bernie Williams NYA |
| 4 | 45th | P Mike Mussina Bal |
| 5 | 52nd | SS Edgar Renteria Fla |
| 6 | 69th | P Robb Nen SF |
| 7 | 76th | C Sandy Alomar Jr. Cle |
| 8 | 93rd | OF Bob Higginson Det |
| 9 | 100th | P Shawn Estes SF |
| 10 | 117th | P Jeff Shaw Cin |
| 11 | 124th | 2B Ray Durham ChA |
| 12 | 141st | OF Andruw Jones Atl |
| 13 | 148th | 1B Kevin Young Pit |
| 14 | 165th | P Livan Hernandez Fla |
| 15 | 172nd | OF Derek Bell Hou |
| 16 | 189th | P Rick Reed NYN |
| 17 | 196th | SS Omar Vizquel Cle |
| 18 | 213th | P Mark Clark ChN |
| 19 | 220th | 1B Rico Brogna Phi |
| 20 | 237th | C Brian Johnson SF |
| 21 | 244th | 2B Quilvio Veras SD |
| 22 | 261st | P Jason Dickson Ana |
| 23 | 268th | OF Shannon Stewart Tor |
| 24 | 285th | OF Doug Glanville Phi |
| 25 | 292nd | P Dave Burba Cle |
| 26 | 309th | P John Thomson Col |
| 27 | 316th | OF Michael Tucker Atl |