| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Mark McGwire StL |
| 2 | 13th | 3B Chipper Jones Atl |
| 3 | 36th | DH Edgar Martinez Sea |
| 4 | 37th | OF Manny Ramirez Cle |
| 5 | 60th | P Tom Glavine Atl |
| 6 | 61st | SS Mark Grudzielanek Mon |
| 7 | 84th | P Troy Percival Ana |
| 8 | 85th | C Dan Wilson Sea |
| 9 | 108th | P Billy Wagner Hou |
| 10 | 109th | OF Ron Gant StL |
| 11 | 132nd | P Shane Reynolds Hou |
| 12 | 133rd | P Todd Stottlemyre StL |
| 13 | 156th | OF Garret Anderson Ana |
| 14 | 157th | P Kevin Appier KC |
| 15 | 180th | P Jamie Moyer Sea |
| 16 | 181st | 1B Paul Konerko LA |
| 17 | 204th | 3B Todd Walker Min |
| 18 | 205th | 1B John Olerud NYN |
| 19 | 228th | OF B.J. Surhoff Bal |
| 20 | 229th | P Ken Hill Ana |
| 21 | 252nd | SS Shawon Dunston Cle |
| 22 | 253rd | OF Greg Vaughn SD |
| 23 | 276th | P Mike Fetters Oak |
| 24 | 277th | OF Mark Kotsay Fla |
| 25 | 300th | 3B Ed Sprague Tor |
| 26 | 301st | OF Chris Stynes Cin |
| 27 | 324th | P Mike Grace Phi |